J3_1NJO_017

3D structure

PDB id

1NJO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP)

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAGAGAACC

Length

28 nucleotides

Bulged bases

1NJO|1|0|G|514, 1NJO|1|0|A|518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1NJO_017 not in the Motif Atlas

Homologous match to J3_7A0S_015

Geometric discrepancy: 0.3736

The information below is about J3_7A0S_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.2

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

10

Unit IDs

1NJO|1|0|G|30
1NJO|1|0|C|31
*
1NJO|1|0|G|485
1NJO|1|0|U|486
1NJO|1|0|G|487
1NJO|1|0|A|488
1NJO|1|0|A|489
1NJO|1|0|A|490
1NJO|1|0|A|491
1NJO|1|0|G|492
1NJO|1|0|A|493
1NJO|1|0|A|494
1NJO|1|0|C|495
*
1NJO|1|0|G|506
1NJO|1|0|A|507
1NJO|1|0|G|508
1NJO|1|0|U|509
1NJO|1|0|G|510
1NJO|1|0|A|511
1NJO|1|0|A|512
1NJO|1|0|A|513
1NJO|1|0|G|514
1NJO|1|0|A|515
1NJO|1|0|G|516
1NJO|1|0|A|517
1NJO|1|0|A|518
1NJO|1|0|C|519
1NJO|1|0|C|520

Current chains

Chain 0

23S ribosomal RNA

Nearby chains