J3_1NJP_001

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGAGCUA*UAGGA*UAACCGAA

Length

20 nucleotides

Bulged bases

1NJP|1|0|G|699, 1NJP|1|0|G|789, 1NJP|1|0|A|802, 1NJP|1|0|C|803, 1NJP|1|0|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1NJP|1|0|U|696
1NJP|1|0|G|697
1NJP|1|0|A|698
1NJP|1|0|G|699
1NJP|1|0|C|700
1NJP|1|0|U|701
1NJP|1|0|A|702
*
1NJP|1|0|U|786
1NJP|1|0|A|787
1NJP|1|0|G|788
1NJP|1|0|G|789
1NJP|1|0|A|790
*
1NJP|1|0|U|800
1NJP|1|0|A|801
1NJP|1|0|A|802
1NJP|1|0|C|803
1NJP|1|0|C|804
1NJP|1|0|G|805
1NJP|1|0|A|806
1NJP|1|0|A|807

Current chains

Chain 0

23S ribosomal RNA

Nearby chains