J3_1NJP_003

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGA*UUCAAAGAGUG*CUCAC

Length

19 nucleotides

Bulged bases

1NJP|1|0|A|1099

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1NJP|1|0|G|1066
1NJP|1|0|G|1067
1NJP|1|0|A|1068
*
1NJP|1|0|U|1092
1NJP|1|0|U|1093
1NJP|1|0|C|1094
1NJP|1|0|A|1095
1NJP|1|0|A|1096
1NJP|1|0|A|1097
1NJP|1|0|G|1098
1NJP|1|0|A|1099
1NJP|1|0|G|1100
1NJP|1|0|U|1101
1NJP|1|0|G|1102
*
1NJP|1|0|C|1111
1NJP|1|0|U|1112
1NJP|1|0|C|1113
1NJP|1|0|A|1114
1NJP|1|0|C|1115

Current chains

Chain 0

23S ribosomal RNA

Nearby chains