J3_1NJP_007

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUCAA*UGUAGAGC*GUAGAAG

Length

20 nucleotides

Bulged bases

1NJP|1|0|U|2275, 1NJP|1|0|U|2298, 1NJP|1|0|G|2313

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1NJP|1|0|C|2274
1NJP|1|0|U|2275
1NJP|1|0|C|2276
1NJP|1|0|A|2277
1NJP|1|0|A|2278
*
1NJP|1|0|U|2296
1NJP|1|0|G|2297
1NJP|1|0|U|2298
1NJP|1|0|A|2299
1NJP|1|0|G|2300
1NJP|1|0|A|2301
1NJP|1|0|G|2302
1NJP|1|0|C|2303
*
1NJP|1|0|G|2310
1NJP|1|0|U|2311
1NJP|1|0|A|2312
1NJP|1|0|G|2313
1NJP|1|0|A|2314
1NJP|1|0|A|2315
1NJP|1|0|G|2316

Current chains

Chain 0

23S ribosomal RNA

Nearby chains