J3_1OND_001

3D structure

PDB id

1OND (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UGAGCUA*UAGGA*UAACCGAA

Length

20 nucleotides

Bulged bases

1OND|1|0|A|802, 1OND|1|0|C|803, 1OND|1|0|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1OND|1|0|U|696
1OND|1|0|G|697
1OND|1|0|A|698
1OND|1|0|G|699
1OND|1|0|C|700
1OND|1|0|U|701
1OND|1|0|A|702
*
1OND|1|0|U|786
1OND|1|0|A|787
1OND|1|0|G|788
1OND|1|0|G|789
1OND|1|0|A|790
*
1OND|1|0|U|800
1OND|1|0|A|801
1OND|1|0|A|802
1OND|1|0|C|803
1OND|1|0|C|804
1OND|1|0|G|805
1OND|1|0|A|806
1OND|1|0|A|807

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains