J3_1OND_003

3D structure

PDB id

1OND (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGA*UUCAAAGAGUG*CUCAC

Length

19 nucleotides

Bulged bases

1OND|1|0|A|1099

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1OND|1|0|G|1066
1OND|1|0|G|1067
1OND|1|0|A|1068
*
1OND|1|0|U|1092
1OND|1|0|U|1093
1OND|1|0|C|1094
1OND|1|0|A|1095
1OND|1|0|A|1096
1OND|1|0|A|1097
1OND|1|0|G|1098
1OND|1|0|A|1099
1OND|1|0|G|1100
1OND|1|0|U|1101
1OND|1|0|G|1102
*
1OND|1|0|C|1111
1OND|1|0|U|1112
1OND|1|0|C|1113
1OND|1|0|A|1114
1OND|1|0|C|1115

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains