J3_1OND_013

3D structure

PDB id

1OND (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CCUG*CGAUAGCGCAUAGUAC*GGAAAG

Length

26 nucleotides

Bulged bases

1OND|1|0|U|460, 1OND|1|0|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1OND_013 not in the Motif Atlas

Homologous match to J3_7A0S_016

Geometric discrepancy: 0.2316

The information below is about J3_7A0S_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07616.2

Basepair signature

cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH

Number of instances in this motif group

11

Unit IDs

1OND|1|0|C|32
1OND|1|0|C|33
1OND|1|0|U|34
1OND|1|0|G|35
*
1OND|1|0|C|457
1OND|1|0|G|458
1OND|1|0|A|459
1OND|1|0|U|460
1OND|1|0|A|461
1OND|1|0|G|462
1OND|1|0|C|463
1OND|1|0|G|464
1OND|1|0|C|465
1OND|1|0|A|466
1OND|1|0|U|467
1OND|1|0|A|468
1OND|1|0|G|469
1OND|1|0|U|470
1OND|1|0|A|471
1OND|1|0|C|472
*
1OND|1|0|G|479
1OND|1|0|G|480
1OND|1|0|A|481
1OND|1|0|A|482
1OND|1|0|A|483
1OND|1|0|G|484

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains