J3_1OND_014

3D structure

PDB id

1OND (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGAGCUUAAG*CGGAGGCGGAG*CGAGUCCGAAUAGGGCGGCAUUAG

Length

45 nucleotides

Bulged bases

1OND|1|0|A|648, 1OND|1|0|A|654, 1OND|1|0|A|655, 1OND|1|0|U|656, 1OND|1|0|A|665, 1OND|1|0|U|666, 1OND|1|0|U|667

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1OND|1|0|C|611
1OND|1|0|G|612
1OND|1|0|A|613
1OND|1|0|G|614
1OND|1|0|C|615
1OND|1|0|U|616
1OND|1|0|U|617
1OND|1|0|A|618
1OND|1|0|A|619
1OND|1|0|G|620
*
1OND|1|0|C|629
1OND|1|0|G|630
1OND|1|0|G|631
1OND|1|0|A|632
1OND|1|0|G|633
1OND|1|0|G|634
1OND|1|0|C|635
1OND|1|0|G|636
1OND|1|0|G|637
1OND|1|0|A|638
1OND|1|0|G|639
*
1OND|1|0|C|646
1OND|1|0|G|647
1OND|1|0|A|648
1OND|1|0|G|649
1OND|1|0|U|650
1OND|1|0|C|651
1OND|1|0|C|652
1OND|1|0|G|653
1OND|1|0|A|654
1OND|1|0|A|655
1OND|1|0|U|656
1OND|1|0|A|657
1OND|1|0|G|658
1OND|1|0|G|659
1OND|1|0|G|660
1OND|1|0|C|661
1OND|1|0|G|662
1OND|1|0|G|663
1OND|1|0|C|664
1OND|1|0|A|665
1OND|1|0|U|666
1OND|1|0|U|667
1OND|1|0|A|668
1OND|1|0|G|669

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains