J3_1OND_015

3D structure

PDB id

1OND (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUCAA*UGUAGAGC*GUAGAAG

Length

20 nucleotides

Bulged bases

1OND|1|0|U|2275, 1OND|1|0|U|2298, 1OND|1|0|A|2299, 1OND|1|0|G|2313

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1OND|1|0|C|2274
1OND|1|0|U|2275
1OND|1|0|C|2276
1OND|1|0|A|2277
1OND|1|0|A|2278
*
1OND|1|0|U|2296
1OND|1|0|G|2297
1OND|1|0|U|2298
1OND|1|0|A|2299
1OND|1|0|G|2300
1OND|1|0|A|2301
1OND|1|0|G|2302
1OND|1|0|C|2303
*
1OND|1|0|G|2310
1OND|1|0|U|2311
1OND|1|0|A|2312
1OND|1|0|G|2313
1OND|1|0|A|2314
1OND|1|0|A|2315
1OND|1|0|G|2316

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains