J3_1OND_016

3D structure

PDB id

1OND (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UC*GUUAAGA*UCAUCA

Length

15 nucleotides

Bulged bases

1OND|1|0|U|2807, 1OND|1|0|U|2808, 1OND|1|0|A|2810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1OND|1|0|U|2789
1OND|1|0|C|2790
*
1OND|1|0|G|2806
1OND|1|0|U|2807
1OND|1|0|U|2808
1OND|1|0|A|2809
1OND|1|0|A|2810
1OND|1|0|G|2811
1OND|1|0|A|2812
*
1OND|1|0|U|2856
1OND|1|0|C|2857
1OND|1|0|A|2858
1OND|1|0|U|2859
1OND|1|0|C|2860
1OND|1|0|A|2861

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain Z

50S ribosomal protein L32