3D structure

PDB id
1Q86 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of CCA-Phe-cap-biotin bound simultaneously at half occupancy to both the A-site and P-site of the the 50S ribosomal Subunit.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CUAAUG*CAUG*CAAG
Length
14 nucleotides
Bulged bases
1Q86|1|A|U|1702
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_1Q86_005 not in the Motif Atlas
Homologous match to J3_4V9F_005
Geometric discrepancy: 0.0444
The information below is about J3_4V9F_005
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_32852.6
Basepair signature
cWW-tSH-F-F-F-cWW-cWW-F
Number of instances in this motif group
5

Unit IDs

1Q86|1|A|C|1404
1Q86|1|A|U|1405
1Q86|1|A|A|1406
1Q86|1|A|A|1407
1Q86|1|A|U|1408
1Q86|1|A|G|1409
*
1Q86|1|A|C|1700
1Q86|1|A|A|1701
1Q86|1|A|U|1702
1Q86|1|A|G|1703
*
1Q86|1|A|C|1715
1Q86|1|A|A|1716
1Q86|1|A|A|1717
1Q86|1|A|G|1718

Current chains

Chain A
23S ribosomal rna

Nearby chains

Chain Q
50S ribosomal protein L19E

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1549 s