J3_1Q86_012
3D structure
- PDB id
- 1Q86 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of CCA-Phe-cap-biotin bound simultaneously at half occupancy to both the A-site and P-site of the the 50S ribosomal Subunit.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- AC*GAUAAGC*GAUUU
- Length
- 14 nucleotides
- Bulged bases
- 1Q86|1|A|U|68, 1Q86|1|A|A|70
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1Q86_012 not in the Motif Atlas
- Homologous match to J3_4V9F_014
- Geometric discrepancy: 0.0415
- The information below is about J3_4V9F_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_35667.2
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
1Q86|1|A|A|52
1Q86|1|A|C|53
*
1Q86|1|A|G|66
1Q86|1|A|A|67
1Q86|1|A|U|68
1Q86|1|A|A|69
1Q86|1|A|A|70
1Q86|1|A|G|71
1Q86|1|A|C|72
*
1Q86|1|A|G|105
1Q86|1|A|A|106
1Q86|1|A|U|107
1Q86|1|A|U|108
1Q86|1|A|U|109
Current chains
- Chain A
- 23S ribosomal rna
Nearby chains
- Chain 2
- 50S ribosomal protein L37e
- Chain 3
- 50S ribosomal protein L39e
- Chain T
- 50S ribosomal protein L23P
- Chain W
- 50S ribosomal protein L29P
Coloring options: