J3_1QVF_004

3D structure

PDB id

1QVF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a deacylated tRNA minihelix bound to the E site of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGA*UCUAAGAAAA*UUAC

Length

17 nucleotides

Bulged bases

1QVF|1|0|A|1192

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1QVF|1|0|G|1159
1QVF|1|0|G|1160
1QVF|1|0|A|1161
*
1QVF|1|0|U|1185
1QVF|1|0|C|1186
1QVF|1|0|U|1187
1QVF|1|0|A|1188
1QVF|1|0|A|1189
1QVF|1|0|G|1190
1QVF|1|0|A|1191
1QVF|1|0|A|1192
1QVF|1|0|A|1193
1QVF|1|0|A|1194
*
1QVF|1|0|U|1205
1QVF|1|0|U|1206
1QVF|1|0|A|1207
1QVF|1|0|C|1208

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain G

50S RIBOSOMAL PROTEIN L10E