J3_1QVG_002
3D structure
- PDB id
- 1QVG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of CCA oligonucleotide bound to the tRNA binding sites of the large ribosomal subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAUCUA*UAG*CGAG
- Length
- 14 nucleotides
- Bulged bases
- 1QVG|1|0|U|777, 1QVG|1|0|G|885
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1QVG_002 not in the Motif Atlas
- Homologous match to J3_4V9F_002
- Geometric discrepancy: 0.0421
- The information below is about J3_4V9F_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64189.2
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
1QVG|1|0|C|774
1QVG|1|0|G|775
1QVG|1|0|A|776
1QVG|1|0|U|777
1QVG|1|0|C|778
1QVG|1|0|U|779
1QVG|1|0|A|780
*
1QVG|1|0|U|866
1QVG|1|0|A|867
1QVG|1|0|G|868
*
1QVG|1|0|C|884
1QVG|1|0|G|885
1QVG|1|0|A|886
1QVG|1|0|G|887
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain 1
- 50S ribosomal protein L39e
- Chain A
- 50S ribosomal protein L2P
- Chain L
- L15 Ribosomal Protein
- Chain Z
- 50S ribosomal protein L37e
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