J3_1QVG_003
3D structure
- PDB id
- 1QVG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of CCA oligonucleotide bound to the tRNA binding sites of the large ribosomal subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CAA*UGUUAG*CGUG
- Length
- 13 nucleotides
- Bulged bases
- 1QVG|1|0|U|825
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1QVG_003 not in the Motif Atlas
- Homologous match to J3_4V9F_003
- Geometric discrepancy: 0.0507
- The information below is about J3_4V9F_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44724.7
- Basepair signature
- cWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
1QVG|1|0|C|789
1QVG|1|0|A|790
1QVG|1|0|A|791
*
1QVG|1|0|U|823
1QVG|1|0|G|824
1QVG|1|0|U|825
1QVG|1|0|U|826
1QVG|1|0|A|827
1QVG|1|0|G|828
*
1QVG|1|0|C|853
1QVG|1|0|G|854
1QVG|1|0|U|855
1QVG|1|0|G|856
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain A
- 50S ribosomal protein L2P
- Chain O
- 50S ribosomal protein L19E
- Chain Y
- L37Ae 50S ribosomal protein
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