J3_1QVG_004

3D structure

PDB id

1QVG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of CCA oligonucleotide bound to the tRNA binding sites of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGA*UCUAAGAAAA*UUAC

Length

17 nucleotides

Bulged bases

1QVG|1|0|A|1192

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1QVG|1|0|G|1159
1QVG|1|0|G|1160
1QVG|1|0|A|1161
*
1QVG|1|0|U|1185
1QVG|1|0|C|1186
1QVG|1|0|U|1187
1QVG|1|0|A|1188
1QVG|1|0|A|1189
1QVG|1|0|G|1190
1QVG|1|0|A|1191
1QVG|1|0|A|1192
1QVG|1|0|A|1193
1QVG|1|0|A|1194
*
1QVG|1|0|U|1205
1QVG|1|0|U|1206
1QVG|1|0|A|1207
1QVG|1|0|C|1208

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain G

50S RIBOSOMAL PROTEIN L10E