J3_1QVG_005

3D structure

PDB id

1QVG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of CCA oligonucleotide bound to the tRNA binding sites of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUAAUG*CAUG*CAAG

Length

14 nucleotides

Bulged bases

1QVG|1|0|U|1702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1QVG_005 not in the Motif Atlas

Homologous match to J3_4V9F_005

Geometric discrepancy: 0.0506

The information below is about J3_4V9F_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

1QVG|1|0|C|1404
1QVG|1|0|U|1405
1QVG|1|0|A|1406
1QVG|1|0|A|1407
1QVG|1|0|U|1408
1QVG|1|0|G|1409
*
1QVG|1|0|C|1700
1QVG|1|0|A|1701
1QVG|1|0|U|1702
1QVG|1|0|G|1703
*
1QVG|1|0|C|1715
1QVG|1|0|A|1716
1QVG|1|0|A|1717
1QVG|1|0|G|1718

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain O

50S ribosomal protein L19E