J3_1SM1_004

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

CGUAAG*CGA*UAAG

Length

13 nucleotides

Bulged bases

1SM1|1|0|A|1315

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1SM1_004 not in the Motif Atlas

Homologous match to J3_4WF9_004

Geometric discrepancy: 0.3596

The information below is about J3_4WF9_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

1SM1|1|0|C|1311
1SM1|1|0|G|1312
1SM1|1|0|U|1313
1SM1|1|0|A|1314
1SM1|1|0|A|1315
1SM1|1|0|G|1316
*
1SM1|1|0|C|1641
1SM1|1|0|G|1642
1SM1|1|0|A|1643
*
1SM1|1|0|U|1656
1SM1|1|0|A|1657
1SM1|1|0|A|1658
1SM1|1|0|G|1659

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains