J3_1SM1_007
3D structure
- PDB id
- 1SM1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.42 Å
Loop
- Sequence
- CUC*GAGC*GUAGAAG
- Length
- 14 nucleotides
- Bulged bases
- 1SM1|1|0|U|2275, 1SM1|1|0|G|2313
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
1SM1|1|0|C|2274
1SM1|1|0|U|2275
1SM1|1|0|C|2276
*
1SM1|1|0|G|2300
1SM1|1|0|A|2301
1SM1|1|0|G|2302
1SM1|1|0|C|2303
*
1SM1|1|0|G|2310
1SM1|1|0|U|2311
1SM1|1|0|A|2312
1SM1|1|0|G|2313
1SM1|1|0|A|2314
1SM1|1|0|A|2315
1SM1|1|0|G|2316
Current chains
- Chain 0
- 23S RIBOSOMAL RNA
Nearby chains
- Chain 9
- 5S ribosomal RNA; 5S rRNA
- Chain D
- 50S RIBOSOMAL PROTEIN L5
- Chain M
- 50S RIBOSOMAL PROTEIN L18
- Chain U
- 50S RIBOSOMAL PROTEIN L27
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