J3_1SM1_010

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

AC*GAAAAGC*GAUGU

Length

14 nucleotides

Bulged bases

1SM1|1|0|A|70, 1SM1|1|0|A|72, 1SM1|1|0|A|73, 1SM1|1|0|G|74

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1SM1|1|0|A|55
1SM1|1|0|C|56
*
1SM1|1|0|G|69
1SM1|1|0|A|70
1SM1|1|0|A|71
1SM1|1|0|A|72
1SM1|1|0|A|73
1SM1|1|0|G|74
1SM1|1|0|C|75
*
1SM1|1|0|G|108
1SM1|1|0|A|109
1SM1|1|0|U|110
1SM1|1|0|G|111
1SM1|1|0|U|112

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 2

50S RIBOSOMAL PROTEIN L34

Chain R

50S RIBOSOMAL PROTEIN L23

Chain W

50S RIBOSOMAL PROTEIN L29