J3_1SM1_016

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

GGA*UUCAAAGAGUGC*GCUCAC

Length

21 nucleotides

Bulged bases

1SM1|1|0|A|1099, 1SM1|1|0|G|1100

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1SM1|1|0|G|1066
1SM1|1|0|G|1067
1SM1|1|0|A|1068
*
1SM1|1|0|U|1092
1SM1|1|0|U|1093
1SM1|1|0|C|1094
1SM1|1|0|A|1095
1SM1|1|0|A|1096
1SM1|1|0|A|1097
1SM1|1|0|G|1098
1SM1|1|0|A|1099
1SM1|1|0|G|1100
1SM1|1|0|U|1101
1SM1|1|0|G|1102
1SM1|1|0|C|1103
*
1SM1|1|0|G|1110
1SM1|1|0|C|1111
1SM1|1|0|U|1112
1SM1|1|0|C|1113
1SM1|1|0|A|1114
1SM1|1|0|C|1115

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 4

50S RIBOSOMAL PROTEIN L36

Chain G

50S RIBOSOMAL PROTEIN L11