J3_1SM1_020
3D structure
- PDB id
- 1SM1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.42 Å
Loop
- Sequence
- CCCAUAGC*GCGCC*GGUCAG
- Length
- 19 nucleotides
- Bulged bases
- 1SM1|1|9|C|14, 1SM1|1|9|A|15, 1SM1|1|9|U|16, 1SM1|1|9|A|17, 1SM1|1|9|C|111
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
1SM1|1|9|C|12
1SM1|1|9|C|13
1SM1|1|9|C|14
1SM1|1|9|A|15
1SM1|1|9|U|16
1SM1|1|9|A|17
1SM1|1|9|G|18
1SM1|1|9|C|19
*
1SM1|1|9|G|69
1SM1|1|9|C|70
1SM1|1|9|G|71
1SM1|1|9|C|72
1SM1|1|9|C|73
*
1SM1|1|9|G|108
1SM1|1|9|G|109
1SM1|1|9|U|110
1SM1|1|9|C|111
1SM1|1|9|A|112
1SM1|1|9|G|113
Current chains
- Chain 9
- 5S RIBOSOMAL RNA
Nearby chains
- Chain 0
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- 50S RIBOSOMAL PROTEIN L18
- Chain T
- GENERAL STRESS PROTEIN CTC
- Chain U
- 50S RIBOSOMAL PROTEIN L27
Coloring options: