J3_1SM1_021
3D structure
- PDB id
- 1SM1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.42 Å
Loop
- Sequence
- CGAG*CGGAG*CGAGUCCGAAUAGGGCGGCAUUAG
- Length
- 33 nucleotides
- Bulged bases
- 1SM1|1|0|A|648, 1SM1|1|0|A|654, 1SM1|1|0|A|655, 1SM1|1|0|U|656, 1SM1|1|0|A|665, 1SM1|1|0|U|666, 1SM1|1|0|U|667, 1SM1|1|0|A|668
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
1SM1|1|0|C|611
1SM1|1|0|G|612
1SM1|1|0|A|613
1SM1|1|0|G|614
*
1SM1|1|0|C|635
1SM1|1|0|G|636
1SM1|1|0|G|637
1SM1|1|0|A|638
1SM1|1|0|G|639
*
1SM1|1|0|C|646
1SM1|1|0|G|647
1SM1|1|0|A|648
1SM1|1|0|G|649
1SM1|1|0|U|650
1SM1|1|0|C|651
1SM1|1|0|C|652
1SM1|1|0|G|653
1SM1|1|0|A|654
1SM1|1|0|A|655
1SM1|1|0|U|656
1SM1|1|0|A|657
1SM1|1|0|G|658
1SM1|1|0|G|659
1SM1|1|0|G|660
1SM1|1|0|C|661
1SM1|1|0|G|662
1SM1|1|0|G|663
1SM1|1|0|C|664
1SM1|1|0|A|665
1SM1|1|0|U|666
1SM1|1|0|U|667
1SM1|1|0|A|668
1SM1|1|0|G|669
Current chains
- Chain 0
- 23S RIBOSOMAL RNA
Nearby chains
- Chain 1
- 50S RIBOSOMAL PROTEIN L33
- Chain 3
- 50S RIBOSOMAL PROTEIN L35
- Chain C
- 50S RIBOSOMAL PROTEIN L4
- Chain J
- 50S RIBOSOMAL PROTEIN L15
Coloring options: