J3_1VQ5_005

3D structure

PDB id

1VQ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'RAA' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUAAUG*CAUG*CAAG

Length

14 nucleotides

Bulged bases

1VQ5|1|0|U|1702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VQ5_005 not in the Motif Atlas

Homologous match to J3_4V9F_005

Geometric discrepancy: 0.0422

The information below is about J3_4V9F_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

1VQ5|1|0|C|1404
1VQ5|1|0|U|1405
1VQ5|1|0|A|1406
1VQ5|1|0|A|1407
1VQ5|1|0|U|1408
1VQ5|1|0|G|1409
*
1VQ5|1|0|C|1700
1VQ5|1|0|A|1701
1VQ5|1|0|U|1702
1VQ5|1|0|G|1703
*
1VQ5|1|0|C|1715
1VQ5|1|0|A|1716
1VQ5|1|0|A|1717
1VQ5|1|0|G|1718

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain P

50S ribosomal protein L19E