J3_1VQ6_005

3D structure

PDB id

1VQ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of c-hpmn and CCA-PHE-CAP-BIO bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CUAAUG*CAUG*CAAG

Length

14 nucleotides

Bulged bases

1VQ6|1|0|U|1702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VQ6_005 not in the Motif Atlas

Homologous match to J3_4V9F_005

Geometric discrepancy: 0.0452

The information below is about J3_4V9F_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

1VQ6|1|0|C|1404
1VQ6|1|0|U|1405
1VQ6|1|0|A|1406
1VQ6|1|0|A|1407
1VQ6|1|0|U|1408
1VQ6|1|0|G|1409
*
1VQ6|1|0|C|1700
1VQ6|1|0|A|1701
1VQ6|1|0|U|1702
1VQ6|1|0|G|1703
*
1VQ6|1|0|C|1715
1VQ6|1|0|A|1716
1VQ6|1|0|A|1717
1VQ6|1|0|G|1718

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain P

50S ribosomal protein L19E