J3_1VQ7_013
3D structure
- PDB id
- 1VQ7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the transition state analogue 'DCA' bound to the large ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- AC*GAUAAGC*GAUUU
- Length
- 14 nucleotides
- Bulged bases
- 1VQ7|1|0|U|68, 1VQ7|1|0|A|70
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1VQ7_013 not in the Motif Atlas
- Homologous match to J3_4V9F_014
- Geometric discrepancy: 0.035
- The information below is about J3_4V9F_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_35667.2
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
1VQ7|1|0|A|52
1VQ7|1|0|C|53
*
1VQ7|1|0|G|66
1VQ7|1|0|A|67
1VQ7|1|0|U|68
1VQ7|1|0|A|69
1VQ7|1|0|A|70
1VQ7|1|0|G|71
1VQ7|1|0|C|72
*
1VQ7|1|0|G|105
1VQ7|1|0|A|106
1VQ7|1|0|U|107
1VQ7|1|0|U|108
1VQ7|1|0|U|109
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain 1
- 50S ribosomal protein L37e
- Chain 2
- 50S ribosomal protein L39e
- Chain S
- 50S ribosomal protein L23P
- Chain V
- 50S ribosomal protein L29P
Coloring options: