J3_1VQK_003

3D structure

PDB id

1VQK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCDA-PHE-CAP-BIO bound to the a site of the ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

CAA*UGUUAG*CGUG

Length

13 nucleotides

Bulged bases

1VQK|1|0|U|825

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VQK_003 not in the Motif Atlas

Homologous match to J3_4V9F_003

Geometric discrepancy: 0.0449

The information below is about J3_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.1

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

1VQK|1|0|C|789
1VQK|1|0|A|790
1VQK|1|0|A|791
*
1VQK|1|0|U|823
1VQK|1|0|G|824
1VQK|1|0|U|825
1VQK|1|0|U|826
1VQK|1|0|A|827
1VQK|1|0|G|828
*
1VQK|1|0|C|853
1VQK|1|0|G|854
1VQK|1|0|U|855
1VQK|1|0|G|856

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain A

50S ribosomal protein L2P

Chain P

50S ribosomal protein L19E

Chain Z

50S ribosomal protein L37Ae