J3_1VQK_011

3D structure

PDB id

1VQK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCDA-PHE-CAP-BIO bound to the a site of the ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

UG*CUGCAAAG*CA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VQK_011 not in the Motif Atlas

Geometric match to J3_4V9F_011

Geometric discrepancy: 0.0531

The information below is about J3_4V9F_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68715.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

10

Unit IDs

1VQK|1|0|U|27
1VQK|1|0|G|28
*
1VQK|1|0|C|480
1VQK|1|0|U|481
1VQK|1|0|G|482
1VQK|1|0|C|483
1VQK|1|0|A|484
1VQK|1|0|A|485
1VQK|1|0|A|486
1VQK|1|0|G|487
*
1VQK|1|0|C|515
1VQK|1|0|A|516

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain 2

50S ribosomal protein L39e

Chain C

50S ribosomal protein L4E

Chain T

50S ribosomal protein L24P