J3_1VQK_014

3D structure

PDB id

1VQK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCDA-PHE-CAP-BIO bound to the a site of the ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

UGACG*CC*GAAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VQK_014 not in the Motif Atlas

Homologous match to J3_4V9F_017

Geometric discrepancy: 0.0373

The information below is about J3_4V9F_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08594.1

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

6

Unit IDs

1VQK|1|0|U|1531
1VQK|1|0|G|1532
1VQK|1|0|A|1533
1VQK|1|0|C|1534
1VQK|1|0|G|1535
*
1VQK|1|0|C|1650
1VQK|1|0|C|1651
*
1VQK|1|0|G|1655
1VQK|1|0|A|1656
1VQK|1|0|A|1657
1VQK|1|0|A|1658
1VQK|1|0|A|1659
1VQK|1|0|G|1660

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain A

50S ribosomal protein L2P

Chain Z

50S ribosomal protein L37Ae