J3_1VQN_005

3D structure

PDB id

1VQN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CC-HPMN AND CCA-PHE-CAP-BIO bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUAAUG*CAUG*CAAG

Length

14 nucleotides

Bulged bases

1VQN|1|0|U|1702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VQN_005 not in the Motif Atlas

Homologous match to J3_4V9F_005

Geometric discrepancy: 0.0591

The information below is about J3_4V9F_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

1VQN|1|0|C|1404
1VQN|1|0|U|1405
1VQN|1|0|A|1406
1VQN|1|0|A|1407
1VQN|1|0|U|1408
1VQN|1|0|G|1409
*
1VQN|1|0|C|1700
1VQN|1|0|A|1701
1VQN|1|0|U|1702
1VQN|1|0|G|1703
*
1VQN|1|0|C|1715
1VQN|1|0|A|1716
1VQN|1|0|A|1717
1VQN|1|0|G|1718

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain P

50S ribosomal protein L19E