J3_1VQO_004

3D structure

PDB id

1VQO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCPMN bound to the large ribosomal subunit haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.2 Å

Loop

Sequence

GGA*UCUAAGAAAA*UUAC

Length

17 nucleotides

Bulged bases

1VQO|1|0|A|1192

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VQO|1|0|G|1159
1VQO|1|0|G|1160
1VQO|1|0|A|1161
*
1VQO|1|0|U|1185
1VQO|1|0|C|1186
1VQO|1|0|U|1187
1VQO|1|0|A|1188
1VQO|1|0|A|1189
1VQO|1|0|G|1190
1VQO|1|0|A|1191
1VQO|1|0|A|1192
1VQO|1|0|A|1193
1VQO|1|0|A|1194
*
1VQO|1|0|U|1205
1VQO|1|0|U|1206
1VQO|1|0|A|1207
1VQO|1|0|C|1208

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain G

ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG

Chain I

50S RIBOSOMAL PROTEIN L11P