3D structure

PDB id
1VQP (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of the transition state analogue 'RAP' bound to the large ribosomal subunit of haloarcula marismortui
Experimental method
X-RAY DIFFRACTION
Resolution
2.25 Å

Loop

Sequence
CAA*UGUUAG*CGUG
Length
13 nucleotides
Bulged bases
1VQP|1|0|U|825
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_1VQP_003 not in the Motif Atlas
Homologous match to J3_4V9F_003
Geometric discrepancy: 0.0353
The information below is about J3_4V9F_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_44724.7
Basepair signature
cWW-tHS-F-cWW-tHS-cWW-F
Number of instances in this motif group
6

Unit IDs

1VQP|1|0|C|789
1VQP|1|0|A|790
1VQP|1|0|A|791
*
1VQP|1|0|U|823
1VQP|1|0|G|824
1VQP|1|0|U|825
1VQP|1|0|U|826
1VQP|1|0|A|827
1VQP|1|0|G|828
*
1VQP|1|0|C|853
1VQP|1|0|G|854
1VQP|1|0|U|855
1VQP|1|0|G|856

Current chains

Chain 0
23S ribosomal rna

Nearby chains

Chain A
50S ribosomal protein L2P
Chain P
50S ribosomal protein L19E
Chain Z
50S ribosomal protein L37Ae

Coloring options:


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