J3_1VQP_004
3D structure
- PDB id
- 1VQP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the transition state analogue 'RAP' bound to the large ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.25 Å
Loop
- Sequence
- GGA*UCUAAGAAAA*UUAC
- Length
- 17 nucleotides
- Bulged bases
- 1VQP|1|0|A|1192
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
1VQP|1|0|G|1159
1VQP|1|0|G|1160
1VQP|1|0|A|1161
*
1VQP|1|0|U|1185
1VQP|1|0|C|1186
1VQP|1|0|U|1187
1VQP|1|0|A|1188
1VQP|1|0|A|1189
1VQP|1|0|G|1190
1VQP|1|0|A|1191
1VQP|1|0|A|1192
1VQP|1|0|A|1193
1VQP|1|0|A|1194
*
1VQP|1|0|U|1205
1VQP|1|0|U|1206
1VQP|1|0|A|1207
1VQP|1|0|C|1208
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain G
- ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG
- Chain I
- 50S RIBOSOMAL PROTEIN L11P
Coloring options: