J3_1VVJ_017

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

1VVJ|1|RA|G|686, 1VVJ|1|RA|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VVJ_017 not in the Motif Atlas

Homologous match to J3_7A0S_004

Geometric discrepancy: 0.0908

The information below is about J3_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

1VVJ|1|RA|C|683
1VVJ|1|RA|G|684
1VVJ|1|RA|A|685
1VVJ|1|RA|G|686
1VVJ|1|RA|C|687
1VVJ|1|RA|U|688
1VVJ|1|RA|A|689
*
1VVJ|1|RA|U|773
1VVJ|1|RA|A|774
1VVJ|1|RA|G|775
*
1VVJ|1|RA|C|791
1VVJ|1|RA|G|792
1VVJ|1|RA|A|793
1VVJ|1|RA|G|794

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R7

50S ribosomal protein L35

Chain RD

50S ribosomal protein L2