J3_1VVJ_018

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VVJ_018 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.0873

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

1VVJ|1|RA|C|698
1VVJ|1|RA|A|699
1VVJ|1|RA|G|700
*
1VVJ|1|RA|C|732
1VVJ|1|RA|G|733
1VVJ|1|RA|A|734
1VVJ|1|RA|A|735
1VVJ|1|RA|C|736
*
1VVJ|1|RA|G|760
1VVJ|1|RA|A|761
1VVJ|1|RA|U|762
1VVJ|1|RA|G|763

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RD

50S ribosomal protein L2