J3_1VVJ_037

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VVJ_037 not in the Motif Atlas

Homologous match to J3_6CZR_024

Geometric discrepancy: 0.1187

The information below is about J3_6CZR_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04260.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

1VVJ|1|XA|U|1073
1VVJ|1|XA|G|1074
*
1VVJ|1|XA|U|1083
1VVJ|1|XA|G|1084
1VVJ|1|XA|U|1085
1VVJ|1|XA|U|1086
1VVJ|1|XA|G|1087
*
1VVJ|1|XA|C|1098
1VVJ|1|XA|G|1099
1VVJ|1|XA|C|1100
1VVJ|1|XA|A|1101
1VVJ|1|XA|A|1102

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XB

30S ribosomal protein S2

Chain XE

30S ribosomal protein S5