J3_1VVJ_047

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

1VVJ|1|YA|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VVJ_047 not in the Motif Atlas

Homologous match to J3_7RQB_008

Geometric discrepancy: 0.092

The information below is about J3_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16623.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

1VVJ|1|YA|C|1306
1VVJ|1|YA|A|1307
1VVJ|1|YA|A|1308
1VVJ|1|YA|G|1309
*
1VVJ|1|YA|C|1605
1VVJ|1|YA|G|1606
1VVJ|1|YA|C|1607
1VVJ|1|YA|A|1608
1VVJ|1|YA|A|1609
1VVJ|1|YA|A|1610
1VVJ|1|YA|C|1611
*
1VVJ|1|YA|G|1620
1VVJ|1|YA|U|1621
1VVJ|1|YA|G|1622

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y7

50S ribosomal protein L35