J3_1VVJ_063
3D structure
- PDB id
- 1VVJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.44 Å
Loop
- Sequence
- GCC*GCCUAGUGAACC*GAUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 1VVJ|1|RA|A|2388, 1VVJ|1|RA|U|2390, 1VVJ|1|RA|A|2426
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_1VVJ_063 not in the Motif Atlas
- Homologous match to J3_9DFE_015
- Geometric discrepancy: 0.1355
- The information below is about J3_9DFE_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
1VVJ|1|RA|G|2282
1VVJ|1|RA|C|2283
1VVJ|1|RA|C|2284
*
1VVJ|1|RA|G|2384
1VVJ|1|RA|C|2385
1VVJ|1|RA|C|2386
1VVJ|1|RA|U|2387
1VVJ|1|RA|A|2388
1VVJ|1|RA|G|2389
1VVJ|1|RA|U|2390
1VVJ|1|RA|G|2391
1VVJ|1|RA|A|2392
1VVJ|1|RA|A|2393
1VVJ|1|RA|C|2394
1VVJ|1|RA|C|2395
*
1VVJ|1|RA|G|2421
1VVJ|1|RA|A|2422
1VVJ|1|RA|U|2423
1VVJ|1|RA|C|2424
1VVJ|1|RA|A|2425
1VVJ|1|RA|A|2426
1VVJ|1|RA|C|2427
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain R0
- 50S ribosomal protein L27
- Chain R1
- 50S ribosomal protein L28
- Chain R6
- 50S ribosomal protein L34
- Chain R8
- tRNA acceptor end mimic
- Chain RP
- 50S ribosomal protein L15
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