J3_1VVJ_076

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CAC*GGUAAG*CGAGG

Length

14 nucleotides

Bulged bases

1VVJ|1|YA|A|2790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VVJ_076 not in the Motif Atlas

Homologous match to J3_9DFE_018

Geometric discrepancy: 0.376

The information below is about J3_9DFE_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_24127.1

Basepair signature

cWW-F-cWW-tWH-F-F-tHS-cWW

Number of instances in this motif group

2

Unit IDs

1VVJ|1|YA|C|2789
1VVJ|1|YA|A|2790
1VVJ|1|YA|C|2791
*
1VVJ|1|YA|G|2805
1VVJ|1|YA|G|2807
1VVJ|1|YA|U|2808
1VVJ|1|YA|A|2809
1VVJ|1|YA|A|2810
1VVJ|1|YA|G|2811
*
1VVJ|1|YA|C|2889
1VVJ|1|YA|G|2891
1VVJ|1|YA|A|2892
1VVJ|1|YA|G|2893
1VVJ|1|YA|G|2894

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YE

50S ribosomal protein L3