J3_1VW3_008

3D structure

PDB id

1VW3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUUC*GUU*AUUAAAA

Length

14 nucleotides

Bulged bases

1VW3|1|A|U|2784, 1VW3|1|A|U|2785

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VW3_008 not in the Motif Atlas

Geometric match to J3_5J7L_046

Geometric discrepancy: 0.1433

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

1VW3|1|A|U|2783
1VW3|1|A|U|2784
1VW3|1|A|U|2785
1VW3|1|A|C|2786
*
1VW3|1|A|G|2812
1VW3|1|A|U|2813
1VW3|1|A|U|2814
*
1VW3|1|A|A|2828
1VW3|1|A|U|2829
1VW3|1|A|U|2830
1VW3|1|A|A|2831
1VW3|1|A|A|2832
1VW3|1|A|A|2833
1VW3|1|A|A|2834

Current chains

Chain A

21S ribosomal RNA

Nearby chains