J3_1VX3_007

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCCAAG*CCCAGCCCGUGGAC*GGUAGCGG

Length

28 nucleotides

Bulged bases

1VX3|1|5|C|216, 1VX3|1|5|C|217, 1VX3|1|5|U|224, 1VX3|1|5|C|245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX3|1|5|C|194
1VX3|1|5|C|195
1VX3|1|5|C|196
1VX3|1|5|A|197
1VX3|1|5|A|198
1VX3|1|5|G|199
*
1VX3|1|5|C|215
1VX3|1|5|C|216
1VX3|1|5|C|217
1VX3|1|5|A|218
1VX3|1|5|G|219
1VX3|1|5|C|220
1VX3|1|5|C|221
1VX3|1|5|C|222
1VX3|1|5|G|223
1VX3|1|5|U|224
1VX3|1|5|G|225
1VX3|1|5|G|226
1VX3|1|5|A|227
1VX3|1|5|C|228
*
1VX3|1|5|G|240
1VX3|1|5|G|241
1VX3|1|5|U|242
1VX3|1|5|A|243
1VX3|1|5|G|244
1VX3|1|5|C|245
1VX3|1|5|G|246
1VX3|1|5|G|247

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA