J3_1VX3_008

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAUAGUCAACAAGUAC*GGAAAG*CUCG

Length

27 nucleotides

Bulged bases

1VX3|1|5|U|354, 1VX3|1|5|A|362, 1VX3|1|8|C|23

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1VX3_008 not in the Motif Atlas

Geometric match to J3_8CRE_004

Geometric discrepancy: 0.1684

The information below is about J3_8CRE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

1VX3|1|5|C|351
1VX3|1|5|G|352
1VX3|1|5|A|353
1VX3|1|5|U|354
1VX3|1|5|A|355
1VX3|1|5|G|356
1VX3|1|5|U|357
1VX3|1|5|C|358
1VX3|1|5|A|359
1VX3|1|5|A|360
1VX3|1|5|C|361
1VX3|1|5|A|362
1VX3|1|5|A|363
1VX3|1|5|G|364
1VX3|1|5|U|365
1VX3|1|5|A|366
1VX3|1|5|C|367
*
1VX3|1|5|G|374
1VX3|1|5|G|375
1VX3|1|5|A|376
1VX3|1|5|A|377
1VX3|1|5|A|378
1VX3|1|5|G|379
*
1VX3|1|8|C|21
1VX3|1|8|U|22
1VX3|1|8|C|23
1VX3|1|8|G|24

Current chains

Chain 5

28S ribosomal RNA

Chain 8

5.8S ribosomal RNA

Nearby chains