J3_1VX3_009

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUGAAAAG*CGUGAAAC*GUGGAUCA

Length

24 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX3|1|5|U|380
1VX3|1|5|U|381
1VX3|1|5|G|382
1VX3|1|5|A|383
1VX3|1|5|A|384
1VX3|1|5|A|385
1VX3|1|5|A|386
1VX3|1|5|G|387
*
1VX3|1|5|C|414
1VX3|1|5|G|415
1VX3|1|5|U|416
1VX3|1|5|G|417
1VX3|1|5|A|418
1VX3|1|5|A|419
1VX3|1|5|A|420
1VX3|1|5|C|421
*
1VX3|1|8|G|13
1VX3|1|8|U|14
1VX3|1|8|G|15
1VX3|1|8|G|16
1VX3|1|8|A|17
1VX3|1|8|U|18
1VX3|1|8|C|19
1VX3|1|8|A|20

Current chains

Chain 5

28S ribosomal RNA

Chain 8

5.8S ribosomal RNA

Nearby chains