J3_1VX3_010

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGCGCAGUCCGCC*GGCGGUGC*GACGUCG

Length

28 nucleotides

Bulged bases

1VX3|1|5|G|703

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX3|1|5|C|447
1VX3|1|5|G|448
1VX3|1|5|C|449
1VX3|1|5|G|450
1VX3|1|5|C|451
1VX3|1|5|A|452
1VX3|1|5|G|453
1VX3|1|5|U|454
1VX3|1|5|C|455
1VX3|1|5|C|456
1VX3|1|5|G|457
1VX3|1|5|C|458
1VX3|1|5|C|459
*
1VX3|1|5|G|697
1VX3|1|5|G|698
1VX3|1|5|C|699
1VX3|1|5|G|700
1VX3|1|5|G|701
1VX3|1|5|U|702
1VX3|1|5|G|703
1VX3|1|5|C|704
*
1VX3|1|5|G|1293
1VX3|1|5|A|1294
1VX3|1|5|C|1295
1VX3|1|5|G|1296
1VX3|1|5|U|1297
1VX3|1|5|C|1298
1VX3|1|5|G|1299

Current chains

Chain 5

28S ribosomal RNA

Nearby chains