J3_1VX3_011

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCGCGACC*GAGGGAGCGAGACCCGUCGCCGCG*CGCACGGGGUCGGCGG

Length

48 nucleotides

Bulged bases

1VX3|1|5|C|962, 1VX3|1|5|G|965, 1VX3|1|5|U|971, 1VX3|1|5|G|1281, 1VX3|1|5|G|1284, 1VX3|1|5|G|1288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX3|1|5|C|706
1VX3|1|5|C|707
1VX3|1|5|G|708
1VX3|1|5|C|709
1VX3|1|5|G|710
1VX3|1|5|A|711
1VX3|1|5|C|712
1VX3|1|5|C|713
*
1VX3|1|5|G|955
1VX3|1|5|A|956
1VX3|1|5|G|957
1VX3|1|5|G|958
1VX3|1|5|G|959
1VX3|1|5|A|960
1VX3|1|5|G|961
1VX3|1|5|C|962
1VX3|1|5|G|963
1VX3|1|5|A|964
1VX3|1|5|G|965
1VX3|1|5|A|966
1VX3|1|5|C|967
1VX3|1|5|C|968
1VX3|1|5|C|969
1VX3|1|5|G|970
1VX3|1|5|U|971
1VX3|1|5|C|972
1VX3|1|5|G|973
1VX3|1|5|C|974
1VX3|1|5|C|975
1VX3|1|5|G|976
1VX3|1|5|C|977
1VX3|1|5|G|978
*
1VX3|1|5|C|1276
1VX3|1|5|G|1277
1VX3|1|5|C|1278
1VX3|1|5|A|1279
1VX3|1|5|C|1280
1VX3|1|5|G|1281
1VX3|1|5|G|1282
1VX3|1|5|G|1283
1VX3|1|5|G|1284
1VX3|1|5|U|1285
1VX3|1|5|C|1286
1VX3|1|5|G|1287
1VX3|1|5|G|1288
1VX3|1|5|C|1289
1VX3|1|5|G|1290
1VX3|1|5|G|1291

Current chains

Chain 5

28S ribosomal RNA

Nearby chains