J3_1VX3_013

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCUGGGCAG*CGUAG*UCCGACCUGGG

Length

25 nucleotides

Bulged bases

1VX3|1|5|A|1613

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX3|1|5|C|1540
1VX3|1|5|C|1541
1VX3|1|5|U|1542
1VX3|1|5|G|1543
1VX3|1|5|G|1544
1VX3|1|5|G|1545
1VX3|1|5|C|1546
1VX3|1|5|A|1547
1VX3|1|5|G|1548
*
1VX3|1|5|C|1580
1VX3|1|5|G|1581
1VX3|1|5|U|1582
1VX3|1|5|A|1583
1VX3|1|5|G|1584
*
1VX3|1|5|U|1609
1VX3|1|5|C|1610
1VX3|1|5|C|1611
1VX3|1|5|G|1612
1VX3|1|5|A|1613
1VX3|1|5|C|1614
1VX3|1|5|C|1615
1VX3|1|5|U|1616
1VX3|1|5|G|1617
1VX3|1|5|G|1618
1VX3|1|5|G|1619

Current chains

Chain 5

28S ribosomal RNA

Nearby chains