J3_1VX3_015

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAGAUGGG*CCGUUCCGAAGGG*CGGCCGAUC

Length

30 nucleotides

Bulged bases

1VX3|1|5|C|2470, 1VX3|1|5|A|2472, 1VX3|1|5|G|2475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX3|1|5|G|2450
1VX3|1|5|A|2451
1VX3|1|5|G|2452
1VX3|1|5|A|2453
1VX3|1|5|U|2454
1VX3|1|5|G|2455
1VX3|1|5|G|2456
1VX3|1|5|G|2457
*
1VX3|1|5|C|2464
1VX3|1|5|C|2465
1VX3|1|5|G|2466
1VX3|1|5|U|2467
1VX3|1|5|U|2468
1VX3|1|5|C|2469
1VX3|1|5|C|2470
1VX3|1|5|G|2471
1VX3|1|5|A|2472
1VX3|1|5|A|2473
1VX3|1|5|G|2474
1VX3|1|5|G|2475
1VX3|1|5|G|2476
*
1VX3|1|5|C|2501
1VX3|1|5|G|2502
1VX3|1|5|G|2503
1VX3|1|5|C|2504
1VX3|1|5|C|2505
1VX3|1|5|G|2506
1VX3|1|5|A|2507
1VX3|1|5|U|2508
1VX3|1|5|C|2509

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA