J3_1VX3_016

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAGAUGG*CCAGU*AGGGUGUAAAUCUC

Length

27 nucleotides

Bulged bases

1VX3|1|5|U|2554, 1VX3|1|5|C|2768

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX3|1|5|G|2549
1VX3|1|5|G|2550
1VX3|1|5|A|2551
1VX3|1|5|G|2552
1VX3|1|5|A|2553
1VX3|1|5|U|2554
1VX3|1|5|G|2555
1VX3|1|5|G|2556
*
1VX3|1|5|C|2571
1VX3|1|5|C|2572
1VX3|1|5|A|2573
1VX3|1|5|G|2574
1VX3|1|5|U|2575
*
1VX3|1|5|A|2757
1VX3|1|5|G|2758
1VX3|1|5|G|2759
1VX3|1|5|G|2760
1VX3|1|5|U|2761
1VX3|1|5|G|2762
1VX3|1|5|U|2763
1VX3|1|5|A|2764
1VX3|1|5|A|2765
1VX3|1|5|A|2766
1VX3|1|5|U|2767
1VX3|1|5|C|2768
1VX3|1|5|U|2769
1VX3|1|5|C|2770

Current chains

Chain 5

28S ribosomal RNA

Nearby chains