J3_1VX3_018
3D structure
- PDB id
- 1VX3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GCACGG*CUGACCCGGUGAGGC*GCUCCGGGGACAGUGC
- Length
- 37 nucleotides
- Bulged bases
- 1VX3|1|5|G|4084, 1VX3|1|5|G|4086, 1VX3|1|5|G|4087, 1VX3|1|5|C|4162, 1VX3|1|5|U|4163
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
1VX3|1|5|G|3934
1VX3|1|5|C|3935
1VX3|1|5|A|3936
1VX3|1|5|C|3937
1VX3|1|5|G|3938
1VX3|1|5|G|3939
*
1VX3|1|5|C|4074
1VX3|1|5|U|4075
1VX3|1|5|G|4076
1VX3|1|5|A|4077
1VX3|1|5|C|4078
1VX3|1|5|C|4079
1VX3|1|5|C|4080
1VX3|1|5|G|4081
1VX3|1|5|G|4082
1VX3|1|5|U|4083
1VX3|1|5|G|4084
1VX3|1|5|A|4085
1VX3|1|5|G|4086
1VX3|1|5|G|4087
1VX3|1|5|C|4088
*
1VX3|1|5|G|4161
1VX3|1|5|C|4162
1VX3|1|5|U|4163
1VX3|1|5|C|4164
1VX3|1|5|C|4165
1VX3|1|5|G|4166
1VX3|1|5|G|4167
1VX3|1|5|G|4168
1VX3|1|5|G|4169
1VX3|1|5|A|4170
1VX3|1|5|C|4171
1VX3|1|5|A|4172
1VX3|1|5|G|4173
1VX3|1|5|U|4174
1VX3|1|5|G|4175
1VX3|1|5|C|4176
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: