J3_1VX3_019

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UAUCAUUG*CCAAGCGUU*ACUAAUA

Length

24 nucleotides

Bulged bases

1VX3|1|5|A|4464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX3|1|5|U|4463
1VX3|1|5|A|4464
1VX3|1|5|U|4465
1VX3|1|5|C|4466
1VX3|1|5|A|4467
1VX3|1|5|U|4468
1VX3|1|5|U|4469
1VX3|1|5|G|4470
*
1VX3|1|5|C|4485
1VX3|1|5|C|4486
1VX3|1|5|A|4487
1VX3|1|5|A|4488
1VX3|1|5|G|4489
1VX3|1|5|C|4490
1VX3|1|5|G|4491
1VX3|1|5|U|4492
1VX3|1|5|U|4493
*
1VX3|1|5|A|4507
1VX3|1|5|C|4508
1VX3|1|5|U|4509
1VX3|1|5|A|4510
1VX3|1|5|A|4511
1VX3|1|5|U|4512
1VX3|1|5|A|4513

Current chains

Chain 5

28S ribosomal RNA

Nearby chains